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Gene Network Topology module
Signaling Pathway Analysis module
Hippron Interactions Knowledge Base
Molecular Interaction Clusters module
Hippron Visualization Engine
I. Dynamic Signaling Maps™ (discontinued)
I. The Web solution for signaling pathway encoding, visualization, and functional analysis

Dynamic Signaling Maps™ is a powerful Web-based signaling pathway software suite that allows scientists and biomedical research organizations to integrate, analyze, manipulate, and visualize biological signaling pathways and biomolecular interaction data.

Both a productivity and a research tool, Dynamic Signaling Maps™ significantly improves performance in Life Sciences Research & Development. It provides decision support in the development of "cocktail drugs" aimed at multiple molecular targets. In effect, all blockbuster drugs on the market today control a limited set of single target molecules. The coordinated, synergic targeting of multiple molecules will provide the finer level of control required to treat complex medical conditions such as cardiovascular disease, cancer, and autoimmune disorders.

Dynamic Signaling Maps™ is seamlessly integrated with Hippron Interactions Knowledge Base™, a database of human-curated biomolecular interactions. As a software tool it helps researchers abstract scientific questions to advanced levels by dealing with interacting systems of genes, proteins, and metabolites. It empowers the bench scientist to easily --

  •  create, store, and update signaling pathways using an intuitive symbolic language
  •  do consistency checks when integrating pathway data from multiple sources
  •  produce signaling pathway diagrams in a variety of editable vector graphics formats
  •  perform signaling event analysis on public and proprietary pathways
  •  convert pathway data to a format suitable for database storage and printing
  •  integrate pathways with biomolecular interactions from human curated databases
  •  display biomolecular interaction clusters as interactive 2D and 3D scalable graphics
  •  retrieve detailed interaction and molecule data from linked database records
  •  extract gene network topologies from time-series microarray expression profiles
  •  overlay time-series expression data onto gene network diagrams

Dynamic Signaling Maps :: Internet Edition is software-as-a-service that allows researchers to use Dynamic Signaling Maps™ from any workstation with Web access, rather than own the software.

 
II. Hippron Visualization Engine™ (discontinued)

Hippron Visualization Engine™ (HVE) is a Web technology for generating interactive diagrams of biomolecular interaction clusters and biological ontologies in Macromedia Flash MX format. Features include:

  •  programatic generation of custom data-based Flash MX applets on the fly
  •  interactive rearrangement of diagram objects
  •  setting diagram node colors server-side and/or client-side
  •  node color customization to indicate gene or protein expression levels
  •  launching actions using node hyperlinks
  •  selection/deselection of multiple nodes using the cursor
  •  setting graph node tool tips
  •  zooming and panning 2D vector graphics using the keyboard

Check out some prototypes.

 
III. More Products

New software is available for download at our affiliate Web site, www.cocea.biz.

 

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